Thanks for the suggestions.
However, rotating a vertical fisheye shot (looking straight down from the air) by 90 degrees does not change anything, it's still a fisheye image of the ground.
As for rotating the resulting panorama image, it alters the 1:6 ratio (makes it 6:1) and I get an error message.
The problem I have is that after stiching, the resulting panorama has a vertical horizon. I believe this is something that has to be corrected by specifying some parameter in Panoweaver before it does the actual stiching.
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